Options

• set_magia_options

• set_modelling_options

• set_study_specs

• set_turbo_options

set_magia_options(varargin)

Set default MAGIA options.

Parameters:

varargin – Varargin explanation here.

Returns:

magia_options – Default MAGIA options struct.

Return type:

struct

set_modelling_options(options)

Creates a default modelling options struct for run_totalbody_turbo. TODO add comments for each parameter.

Parameters:

• tracer (char array) – Tracer determines used model (to some extent).

• frametimes (Nx2 double array) – Frametimes used in the study.

Returns:

modelling_options – Modelling options struct for run_totalbody_turbo that contains default options.

Return type:

struct

set_study_specs(options)

Creates a study_specs struct template with all the necessary fields that the user must fill.

Parameters:

• frames (Nx2 double array, default: []) – Frametimes of the study.

• tracer (char array, default: '') – Tracer that was used in the study.

• scanner (char array, default: '') – Used scanner in the study.

• dose (double, default: NaN) – Given dose in the study.

• weight (double, default: NaN) – Weight of the patient in the study.

• dc (logical, default: NaN) – If the data is decay corrected or not. 0 = no decay correction, 1 = decay corrected.

• mri_code (char array, default: '') – Necessary if ROIs are defined using FreeSurfer or if spatial normalization is done via MRI.

• glucose (double, default: NaN) – Glucose uptake value.

• hct (double, default: NaN) – Hematocrit value.

Returns:

study_specs – Specifies all necessary fields for study_specs that the user must fill before running TURBO.

Return type:

struct

set_turbo_options(options)

Creates a struct containing settings for TURBO with default values.

Parameters:

• frametimes (Nx2 array, default : []) – Frametimes of the scan.

• tracer (char array, default : '') – Used tracer

Returns:

turbo_options – Struct containing all parameters controlling turbo. These values are set to default. You can modify these by altering the field values.

Return type:

struct

Notes

There are also separate parameter structs study_info, modelling_options and magia_options that need to be initialized separately.